Research
Single Cell Rna
Bioinformatics
Biostatistics
Microbiome Sequencing Data
Single Cell Sequencing Data
Genomic Data
High Risk
Multiple Testing
Current Status
Irritable Bowel Syndrome
Potential Roles, Potential Role
Cell Type
Sequencing Data Analysis
Cohort Analysis
Deep Venous Thrombosis
Key Factors
Network Analysis
Commensal Microbiota
Comparative Analysis
Critical Role
Microbiome Diversity
Preterm Birth Risk
Rectovaginal Fistula
Sars Cov
Surgical Success
List of Publications (23)
In 2024
23
Neoadjuvant cobimetinib and atezolizumab with or without vemurafenib for high-risk operable Stage III melanoma: the Phase II NeoACTIVATE trial. TJ Hieken, GD Nelson, TJ Flotte, EP Grewal, J Chen, RR McWilliams, ... Nature Communications 15 (1), 1430, 2024.
Found on Publication Page
22
2dGBH: Two-dimensional group Benjamini-Hochberg procedure for false discovery rate control in two-way multiple testing of genomic data. L Yang, P Wang, J Chen Bioinformatics 40 (2), btae035, 2024.
Found on Publication Page
In 2023
21
Benchmarking differential abundance analysis methods for correlated microbiome sequencing data. L Yang, J Chen Briefings in bioinformatics 24 (1), bbac607, 2023.
Found on Publication Page
20
TP63 fusions drive multicomplex enhancer rewiring, lymphomagenesis, and EZH2 dependence. G Wu, N Yoshida, J Liu, X Zhang, Y Xiong, TB Heavican-Foral, E Mandato, ... Science translational medicine 15 (714), eadi7244, 2023.
Found on Publication Page
19
Robust Differential Abundance Analysis of Microbiome Sequencing Data. G Li, L Yang, J Chen, X Zhang Genes 14 (11), 2000, 2023.
Found on Publication Page
18
Single-cell Mayo Map (scMayoMap): an easy-to-use tool for cell type annotation in single-cell RNA-sequencing data analysis. L Yang, YE Ng, H Sun, Y Li, LCS Chini, NK LeBrasseur, J Chen, X Zhang BMC biology 21 (1), 223, 2023.
Found on Publication Page
17
TP63 fusions drive enhancer rewiring, lymphomagenesis, and dependence on EZH2. G Wu, N Yoshida, J Liu, X Zhang, Y Xiong, T Heavican-Foral, H Liu, ... Cancer Research 83 (7_Supplement), 5755-5755, 2023.
Found on Publication Page
In 2022
16
A comprehensive evaluation of microbial differential abundance analysis methods: current status and potential solutions. L Yang, J Chen Microbiome 10 (1), 130, 2022.
Found on Publication Page
15
Gut microbial -glucuronidases regulate host luminal proteases and are depleted in irritable bowel syndrome. AL Edwinson, L Yang, S Peters, N Hanning, P Jeraldo, P Jagtap, ... Nature microbiology 7 (5), 680-694, 2022.
Found on Publication Page
14
Potential role of inflammation-promoting biliary microbiome in primary sclerosing cholangitis and cholangiocarcinoma. K Miyabe, V Chandrasekhara, N Wongjarupong, J Chen, L Yang, ... Cancers 14 (9), 2120, 2022.
Found on Publication Page
13
TP63 fusions drive enhancer rewiring, lymphomagenesis, and dependence on EZH2. G Wu, N Yoshida, J Liu, X Zhang, TB Heavican-Foral, H Liu, GM Nelson, ... Blood 140 (Supplement 1), 1696-1697, 2022.
Found on Publication Page
In 2021
12
Ethnic variability associating gut and oral microbiome with obesity in children. B Balakrishnan, V Selvaraju, J Chen, P Ayine, L Yang, J Ramesh Babu, ... Gut Microbes 13 (1), 1882926, 2021.
Found on Publication Page
11
Comparative analysis of impact of human occupancy on indoor microbiomes. L Cao, L Yang, CS Swanson, S Li, Q He Frontiers of Environmental Science & Engineering 15, 1-10, 2021.
Found on Publication Page
10
Colonic expression of Ace2, the SARS-CoV-2 entry receptor, is suppressed by commensal human microbiota. A Edwinson, L Yang, J Chen, M Grover Gut Microbes 13 (1), 1984105, 2021.
Found on Publication Page
9
Predominance of Atopobium vaginae at midtrimester: a potential indicator of preterm birth risk in a Nigerian cohort. NM Odogwu, J Chen, CA Onebunne, P Jeraldo, L Yang, S Johnson, ... Msphere 6 (1), 10.1128/msphere. 01261-20, 2021.
Found on Publication Page
8
Microbiome diversity predicts surgical success in patients with rectovaginal fistula. DA Leach, J Chen, L Yang, HK Chua, MRS Walther-Anto nio, JA Occhino International urogynecology journal 32, 2491-2501, 2021.
Found on Publication Page
7
2dFDR: a new approach to confounder adjustment substantially increases detection power in omics association studies. S Yi, X Zhang, L Yang, J Huang, Y Liu, C Wang, DJ Schaid, J Chen Genome biology 22 (1), 1-18, 2021.
Found on Publication Page
6
378 COMMENSAL MICROBIOTA PLAYS A CRITICAL ROLE IN REGULATION OF INTESTINAL PROTEOLYTIC ACTIVITY. A Edwinson, L Yang, SA Peters, N Hanning, J Simpson, MK Breen-Lyles, ... Gastroenterology 160 (6), S-75, 2021.
Found on Publication Page
5
MICROBIAL COLONIZATION SUPRESSES COLONIC ACE2 EXPRESSION. A Edwinson, L Yang, SA Peters, J Chen, M Grover Gastroenterology, S-191, 2021.
Found on Publication Page
In 2020
4
Deep venous thrombosis in COVID-19 patients: a cohort analysis. C Cai, Y Guo, Y You, K Hu, F Cai, M Xie, L Yang, K Ling, D Ye, S Misra, ... Clinical and Applied Thrombosis/Hemostasis 26, 1076029620982669, 2020.
Found on Publication Page
In 2019
3
Viral abundance and diversity vary with depth in a southeastern United States agricultural ultisol. X Liang, RE Wagner, J Zhuang, JM DeBruyn, SW Wilhelm, F Liu, L Yang, ... Soil Biology and Biochemistry 137, 107546, 2019.
Found on Publication Page
In 2017
2
Key factors affecting the price of Airbnb listings: A geographically weighted approach. Z Zhang, RJC Chen, LD Han, L Yang Sustainability 9 (9), 1635, 2017.
Found on Publication Page
In 2016
1
Network analysis of tourist flows: a cross-provincial boundary perspective. H Peng, J Zhang, Z Liu, L Lu, L Yang Tourism Geographies 18 (5), 561-586, 2016.
Found on Publication Page
